Videos not seeking or showing total t

Weird problem, and judging by a quick Google search, I'm not the only one having the problem.
So, I'm using Linux, and using mencoder (a very popular encoding program), I can encode the videos properly, and they play on my computer and my Zen. Then, I use libmtp (Linux MTP implementation) and mtpfs (MTP filesystem emulation) to copy the video over to the player. The video plays fine, except I cannot rewind or fast forward, and I can't see the total time of the movie. The strange thing is, if I load the same video onto the SD card, and then play it, everything works fine.
I'm encoding the videos as 320x240 AVI XviD. I've tried rebuilding the AVI index (with -forceidx), but that does not help. Music seeks normally. I'm guessing that this is either a bug with libmtp, or with the Zen player. Does anyone have any ideas, or have you gotten the videos to work properly if you load them with Linux? Maybe there is a workaround?
Thanks in advance!

I'd like to also add, I compared the byte sizes and actual bytes on the videos on my computer and the Zen, and they were the same. Basically, I mean that the EXACT same information of the video was on my computer and the Zen, so I know that the videos were copied properly and entirely.

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