Way of permanently removing bleed from a linked PDF?

I'm working on a linked online catalog on a free hosting service.  I linked the entire PDF, then uploaded it.  The links themselves work fine.  Trouble is, the cropped PDF still has the bleed in the doc because it was exported for print instead of web, so the link coordinates are adjusted down and to the right to compensate for the "imaginary" bleed when uploaded.  The hosting company's response is to simply re-export from InDesign for web and link again.  I'd rather not do this, as this is a 140-page catalog with maybe 20 links on each page.
Is there a way to crop out the bleed completely while keeping the links in Acrobat?  I was hoping there was some way of optimizing that would remove the extra bleed, but I haven't found the solution yet.
Or does anyone know of a plugin that can shift link coordinates in a document?
Thanks for reading!

I am changing it from linked list to blocking queue however I do have a question about what I should use to poll the data? Instead of a remove should I use take which seemed to remove the first element and if there wasn't one wait until there was. I was trying to not have the threads blocked because I do need to stop them when a disconnect is sent from the main thread.

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