WD Caviar Green 2TB - disappearing drive

Hi all,
I have installed a 2TB WD drive for use as a time machine drive. (expanding from 1TB external)
Sometimes the disk displays odd characteristics, such as:
• Overnight (last night for example) TM didn't do any further backups after 7.43pm. This caused system preferences to crash and of course TM wasn't accessible. And Finder also hung. So I restarted...
• But because of whatever reason the computer wouldn't restart, so now I had to do a hard restart, but the WD drive wouldn't show up.
• I shut down, remove the drive from its bay (bay 2), put it back in, restart and all is well again.
*Now, is this a low power/sleep issue?* It would seem that the hard restart would remove that question.
*Is it a jumper settings issue?* Removing the drive and putting it back in would seem to eliminate that issue. (for the record, they are at OPT1 enabled, as that seemed to work best at the time.)
Does anyone know what the best way forward is? It would seem to me that neither the drive or the Mac are broken (there was a 500gb WD in that bay before with no problems) and when the drive is mounted - it seems to work fine, until I'm not around then there is a problem.
I would prefer to allow my drives to sleep when unused, but is switching that preference off the only option?
Thanks,
Aaron

Why or what jumper setting is that for? default as is with none.
Removing and installing again isn't going to change anything.
It comes with SSC and OPT1 Disabled. Leave it that way.
And I would not allow drives to spin down.
I am also not a big fan if at all of TimeMachine (think after 3 yrs but no) so I favor SuperDuper, CCC and Tri-Backup 5.
Is it a jumper settings issue? Removing the drive and putting it back in would seem to eliminate that issue. (for the record, they are at OPT1 enabled, as that seemed to work best at the time.)
10.5.6 and above should be fine. Even with the newest version (with 64MB cache).
Western Digital 2 TB Caviar Green SATA Intellipower 64 MB Cache Bulk/OEM Desktop Hard Drive WD20EARS
http://www.wdc.com/en/products/products.asp?driveid=773
http://support.wdc.com/product/kb.asp?groupid=608
What I do with any new WD drive is run it through WD Lifeguard (in Windows 7) and do full extended test, full format with zero.
http://support.wdc.com/product/download.asp?groupid=608
There have been issues with 2TB drives in Mac Pro 1,1 (often as last in bay #4 it seemed).
How about mounting in external FW400?

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