Web Application working correctly only with Everyone user added to user privilages

Hello,
I have an web application in Sharepoint 2013 which only works correctly with the Everyone (Read Only) user added to User Privileges in Central Admin. 
If I remove Everyone user from user privileges, user domains, that are added to access groups in Site Permissions, are directed to Request Access page of the site. I cannot understand how is this happening, specially because I have other Web App on the same
server which are working correctly.
Could you please advice me how could I trace the problem and resolve it.
Thank you!

Hi Bogdan,
According to your description, my understanding is that Everyone user cannot access the web application except adding the account to user policy of the web application in Central Administration.
I recommend to check if the Super Reader account has been given the Full Read permission on the web application in Central Administration.
If not, add the account to the User Policy of the web application and grant Full Read permission to the account.
Best regards.
Thanks
Victoria Xia
TechNet Community Support

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