Website to PDF - Keeping links ...

Hi
I've been asked to do a job where I have to convert a website so that each page is a pdf.
I have done this using the convert web to pdf website which is free and brilliant. It keeps the links which is impressive.
However it plonks a logo down the bottom of the convert2pdf website down the bottom which the client doesnt want. He also wants various other things link at the top of each web page there is a "join the mailing list" bit which he wants removed.
I thought of bringing the pdf into indesign and just covering the things he doesnt want with white boxes and re-pdfing but then the links disapear.
Any ideas anyone?
Cheers
S

I have tried to use this function but the page doesnt come out in the correct format. It seems to take the menu bar and make it into a list, one under the other!
Cheers
S

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Date: Wed, 4 Nov 2009 14:48:45 -0700
From: [email protected]
To: [email protected]
Subject: Pdf's Links and Bookmarks
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Website to PDF - Keeping links ...

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