Weird QT issue on Mav: stuttering from disk but ok from network

Issue is just as title implies. File stutters a lot when played from disk but is butter smooth when the same file is played from network
- Mac OS X is a clean install. No significant third party stuff or drivers installed. No crapware. Not even flash.
- Disk seems OK according to SMART status. No perm or disk errors. Some "dd" tests show 90MB/s read speed and ~50MB/s write speed.
- Issue occurs with both one and 2 monitors.
- Alternative video players like MPlayerX and Movist can play the same file on disk just fine.
- I have Obcene ammounts of RAM for a laptop.
Is this a known issue? Am I the only one suffering this weird behavior?
Thanks in advance!
Hardware Information:
          MacBook Pro (13-inch, Late 2011)
          MacBook Pro - model: MacBookPro8,1
          1 2.4 GHz Intel Core i5 CPU: 2 cores
          16 GB RAM
Video Information:
          Intel HD Graphics 3000 - VRAM: 512 MB
Audio Plug-ins:
          BluetoothAudioPlugIn: Version: 1.0
          AirPlay: Version: 1.9
          AppleAVBAudio: Version: 2.0.0
          iSightAudio: Version: 7.7.3
System Software:
          OS X 10.9 (13A603) - Uptime: 0 days 2:54:8
Disk Information:
          TOSHIBA MK5065GSXF disk0 : (500.11 GB)
                    EFI (disk0s1) <not mounted>: 209.7 MB
                    Macintosh HD (disk0s2) /: 499.25 GB (419.31 GB free)
                    Recovery HD (disk0s3) <not mounted>: 650 MB
          HL-DT-ST DVDRW  GS31N 
USB Information:
          Apple Inc. Apple Internal Keyboard / Trackpad
          Apple Inc. BRCM2070 Hub
                    Apple Inc. Bluetooth USB Host Controller
          Apple Inc. iPhone
          Apple Inc. FaceTime HD Camera (Built-in)
          Apple Computer, Inc. IR Receiver
FireWire Information:
Thunderbolt Information:
          Apple Inc. thunderbolt_bus
Kernel Extensions:
Problem System Launch Daemons:
Problem System Launch Agents:
Launch Daemons:
          [loaded] org.macosforge.xquartz.privileged_startx.plist
Launch Agents:
          [loaded] org.macosforge.xquartz.startx.plist
User Launch Agents:
          [loaded] com.google.keystone.agent.plist
User Login Items:
          ulzeraj
          iTunesHelper
3rd Party Preference Panes:
          TeXDistPrefPane
Internet Plug-ins:
          Default Browser.plugin
          QuickTime Plugin.plugin
User Internet Plug-ins:
Bad Fonts:
          None
Time Machine:
          Mobile backups: ON
          Auto backup: YES
          Volumes being backed up:
                    Macintosh HD: Disk size: 499.25 GB Disk used: 79.94 GB
          Destinations:
                    bkp [Network] (Last used)
                    Total size: 536.53 GB
                    Total number of backups: 16
                    Oldest backup: 2013-10-30 22:40:51 +0000
                    Last backup: 2013-11-12 00:55:42 +0000
                    Size of backup disk: Adequate
                              Backup size 536.53 GB > (Disk used 79.94 GB X 3)
Top Processes by CPU:
               4%          WindowServer
               1%          hidd
               1%          EtreCheck
               0%          SystemUIServer
               0%          configd
               0%          QuickTime Player
               0%          Terminal
               0%          aosnotifyd
Top Processes by Memory:
          229 MB             Safari
          98 MB              mds_stores
          98 MB              WindowServer
          98 MB              com.apple.IconServicesAgent
          82 MB              Finder
          82 MB              Mail
          82 MB              MPlayerX
          82 MB              Skype
          49 MB              Terminal
          49 MB              mds
Virtual Memory Statistics:
          10.95 GB           Free RAM
          2.88 GB            Active RAM
          573 MB             Inactive RAM
          1.61 GB            Wired RAM
          435 MB             Page-ins
          0 B                Page-outs

Issue is just as title implies. File stutters a lot when played from disk but is butter smooth when the same file is played from network
- Mac OS X is a clean install. No significant third party stuff or drivers installed. No crapware. Not even flash.
- Disk seems OK according to SMART status. No perm or disk errors. Some "dd" tests show 90MB/s read speed and ~50MB/s write speed.
- Issue occurs with both one and 2 monitors.
- Alternative video players like MPlayerX and Movist can play the same file on disk just fine.
- I have Obcene ammounts of RAM for a laptop.
Is this a known issue? Am I the only one suffering this weird behavior?
Thanks in advance!
Hardware Information:
          MacBook Pro (13-inch, Late 2011)
          MacBook Pro - model: MacBookPro8,1
          1 2.4 GHz Intel Core i5 CPU: 2 cores
          16 GB RAM
Video Information:
          Intel HD Graphics 3000 - VRAM: 512 MB
Audio Plug-ins:
          BluetoothAudioPlugIn: Version: 1.0
          AirPlay: Version: 1.9
          AppleAVBAudio: Version: 2.0.0
          iSightAudio: Version: 7.7.3
System Software:
          OS X 10.9 (13A603) - Uptime: 0 days 2:54:8
Disk Information:
          TOSHIBA MK5065GSXF disk0 : (500.11 GB)
                    EFI (disk0s1) <not mounted>: 209.7 MB
                    Macintosh HD (disk0s2) /: 499.25 GB (419.31 GB free)
                    Recovery HD (disk0s3) <not mounted>: 650 MB
          HL-DT-ST DVDRW  GS31N 
USB Information:
          Apple Inc. Apple Internal Keyboard / Trackpad
          Apple Inc. BRCM2070 Hub
                    Apple Inc. Bluetooth USB Host Controller
          Apple Inc. iPhone
          Apple Inc. FaceTime HD Camera (Built-in)
          Apple Computer, Inc. IR Receiver
FireWire Information:
Thunderbolt Information:
          Apple Inc. thunderbolt_bus
Kernel Extensions:
Problem System Launch Daemons:
Problem System Launch Agents:
Launch Daemons:
          [loaded] org.macosforge.xquartz.privileged_startx.plist
Launch Agents:
          [loaded] org.macosforge.xquartz.startx.plist
User Launch Agents:
          [loaded] com.google.keystone.agent.plist
User Login Items:
          ulzeraj
          iTunesHelper
3rd Party Preference Panes:
          TeXDistPrefPane
Internet Plug-ins:
          Default Browser.plugin
          QuickTime Plugin.plugin
User Internet Plug-ins:
Bad Fonts:
          None
Time Machine:
          Mobile backups: ON
          Auto backup: YES
          Volumes being backed up:
                    Macintosh HD: Disk size: 499.25 GB Disk used: 79.94 GB
          Destinations:
                    bkp [Network] (Last used)
                    Total size: 536.53 GB
                    Total number of backups: 16
                    Oldest backup: 2013-10-30 22:40:51 +0000
                    Last backup: 2013-11-12 00:55:42 +0000
                    Size of backup disk: Adequate
                              Backup size 536.53 GB > (Disk used 79.94 GB X 3)
Top Processes by CPU:
               4%          WindowServer
               1%          hidd
               1%          EtreCheck
               0%          SystemUIServer
               0%          configd
               0%          QuickTime Player
               0%          Terminal
               0%          aosnotifyd
Top Processes by Memory:
          229 MB             Safari
          98 MB              mds_stores
          98 MB              WindowServer
          98 MB              com.apple.IconServicesAgent
          82 MB              Finder
          82 MB              Mail
          82 MB              MPlayerX
          82 MB              Skype
          49 MB              Terminal
          49 MB              mds
Virtual Memory Statistics:
          10.95 GB           Free RAM
          2.88 GB            Active RAM
          573 MB             Inactive RAM
          1.61 GB            Wired RAM
          435 MB             Page-ins
          0 B                Page-outs

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            at oracle.javatools.db.execute.QueryWrapper$QueryExecutionRunnable.runImpl(QueryWrapper.java:390)
            - locked <0x1828f7f0> (a oracle.jdbc.driver.T2CConnection)
            at oracle.javatools.db.execute.StatementWrapper$ExecutionRunnable.run(StatementWrapper.java:692)
            - locked <0x10c504c0> (a oracle.javatools.db.execute.QueryWrapper$QueryExecutionRunnable)
            at oracle.ideimpl.db.ProgressBarExecutionWrapper.runAndLog(ProgressBarExecutionWrapper.java:136)
            at oracle.ideimpl.db.ProgressBarExecutionWrapper.access$000(ProgressBarExecutionWrapper.java:38)
            at oracle.ideimpl.db.ProgressBarExecutionWrapper$R.run(ProgressBarExecutionWrapper.java:180)
            at oracle.ide.dialogs.ProgressBar.run(ProgressBar.java:655)
            at java.lang.Thread.run(Thread.java:619)
    "pool-2-thread-2" prio=6 tid=0x06795400 nid=0xa58 waiting on condition [0x073ef000]
       java.lang.Thread.State: TIMED_WAITING (parking)
            at sun.misc.Unsafe.park(Native Method)
            - parking to wait for  <0x131fded0> (a java.util.concurrent.SynchronousQueue$TransferStack)
            at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:198)
            at java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:424)
            at java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:323)
            at java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:874)
            at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:945)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
            at java.lang.Thread.run(Thread.java:619)
    "pool-4-thread-1" prio=6 tid=0x06654400 nid=0xa08 waiting on condition [0x05dff000]
       java.lang.Thread.State: TIMED_WAITING (parking)
            at sun.misc.Unsafe.park(Native Method)
            - parking to wait for  <0x18334e28> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
            at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:198)
            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1963)
            at java.util.concurrent.DelayQueue.take(DelayQueue.java:164)
            at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:583)
            at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:576)
            at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:947)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
            at java.lang.Thread.run(Thread.java:619)
    "WeakDataReference polling" prio=2 tid=0x064de800 nid=0xc58 in Object.wait() [0x0eb3f000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
            - locked <0x18335088> (a java.lang.ref.ReferenceQueue$Lock)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
            at oracle.ide.util.WeakDataReference$Cleaner.run(WeakDataReference.java:88)
            at java.lang.Thread.run(Thread.java:619)
    "Background Parser" prio=6 tid=0x04decc00 nid=0x1248 waiting on condition [0x0ea3f000]
       java.lang.Thread.State: TIMED_WAITING (sleeping)
            at java.lang.Thread.sleep(Native Method)
            at oracle.dbtools.raptor.plsql.BackgroundParser$1.construct(BackgroundParser.java:112)
            at oracle.dbtools.raptor.utils.NamedSwingWorker$2.run(NamedSwingWorker.java:115)
            at java.lang.Thread.run(Thread.java:619)
    "IconOverlayTracker Timer" prio=6 tid=0x063e5400 nid=0x16fc in Object.wait() [0x076ef000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at java.util.TimerThread.mainLoop(Timer.java:483)
            - locked <0x180c2840> (a java.util.TaskQueue)
            at java.util.TimerThread.run(Timer.java:462)
    "WaitCursor-Timer" prio=6 tid=0x04e39c00 nid=0x910 in Object.wait() [0x074ef000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at java.util.TimerThread.mainLoop(Timer.java:483)
            - locked <0x1792d840> (a java.util.TaskQueue)
            at java.util.TimerThread.run(Timer.java:462)
    "Native Directory Watcher" prio=2 tid=0x04e38400 nid=0x12b8 runnable [0x062ef000]
       java.lang.Thread.State: RUNNABLE
            at oracle.ide.natives.NativeHandler.enterWatcherThread(Native Method)
            at oracle.ide.natives.NativeHandler$2.run(NativeHandler.java:252)
            at java.lang.Thread.run(Thread.java:619)
    "Background Parser" prio=6 tid=0x04d86c00 nid=0x12ac waiting on condition [0x061af000]
       java.lang.Thread.State: TIMED_WAITING (sleeping)
            at java.lang.Thread.sleep(Native Method)
            at oracle.dbtools.raptor.plsql.BackgroundParser$1.construct(BackgroundParser.java:112)
            at oracle.dbtools.raptor.utils.NamedSwingWorker$2.run(NamedSwingWorker.java:115)
            at java.lang.Thread.run(Thread.java:619)
    "Background Parser" prio=6 tid=0x04d82800 nid=0x1240 waiting on condition [0x05eff000]
       java.lang.Thread.State: TIMED_WAITING (sleeping)
            at java.lang.Thread.sleep(Native Method)
            at oracle.dbtools.raptor.plsql.BackgroundParser$1.construct(BackgroundParser.java:112)
            at oracle.dbtools.raptor.utils.NamedSwingWorker$2.run(NamedSwingWorker.java:115)
            at java.lang.Thread.run(Thread.java:619)
    "TextBufferScavenger" prio=6 tid=0x04d81400 nid=0x10ec in Object.wait() [0x05cff000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            - waiting on <0x1729c0a8> (a java.lang.ref.ReferenceQueue$Lock)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
            - locked <0x1729c0a8> (a java.lang.ref.ReferenceQueue$Lock)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
            at oracle.ide.model.TextNode$FacadeBufferReference$PollingThread.run(TextNode.java:1949)
    "BaseTreeExplorer.NodeOpeningExecutor" prio=6 tid=0x04ba0400 nid=0x11bc waiting on condition [0x05aff000]
       java.lang.Thread.State: WAITING (parking)
            at sun.misc.Unsafe.park(Native Method)
            - parking to wait for  <0x131a1910> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
            at java.util.concurrent.locks.LockSupport.park(LockSupport.java:158)
            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1925)
            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:358)
            at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:947)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
            at java.lang.Thread.run(Thread.java:619)
    "pool-2-thread-1" prio=6 tid=0x04c1c400 nid=0x11b8 waiting on condition [0x059ff000]
       java.lang.Thread.State: TIMED_WAITING (parking)
            at sun.misc.Unsafe.park(Native Method)
            - parking to wait for  <0x131fded0> (a java.util.concurrent.SynchronousQueue$TransferStack)
            at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:198)
            at java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:424)
            at java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:323)
            at java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:874)
            at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:945)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
            at java.lang.Thread.run(Thread.java:619)
    "Scheduler" daemon prio=6 tid=0x04b9a800 nid=0x11b0 in Object.wait() [0x058ff000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at oracle.dbtools.raptor.backgroundTask.TaskLinkedList.takeNextTask(TaskLinkedList.java:47)
            - locked <0x131a1ba0> (a oracle.dbtools.raptor.backgroundTask.TaskLinkedList)
            at oracle.dbtools.raptor.backgroundTask.RaptorTaskManager$SchedulerThread.run(RaptorTaskManager.java:422)
    "TimerQueue" daemon prio=6 tid=0x0445b000 nid=0x10fc in Object.wait() [0x057ff000]
       java.lang.Thread.State: TIMED_WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at javax.swing.TimerQueue.run(TimerQueue.java:236)
            - locked <0x12f7c028> (a javax.swing.TimerQueue)
            at java.lang.Thread.run(Thread.java:619)
    "ChangeSetService" prio=2 tid=0x049d0800 nid=0x1060 in Object.wait() [0x053ff000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            - waiting on <0x12e140c8> (a oracle.jdevimpl.vcs.changeset.ChangeSetService)
            at java.lang.Object.wait(Object.java:485)
            at oracle.jdevimpl.vcs.changeset.ChangeSetService.awaitEvents(ChangeSetService.java:178)
            - locked <0x12e140c8> (a oracle.jdevimpl.vcs.changeset.ChangeSetService)
            at oracle.jdevimpl.vcs.changeset.ChangeSetService.eventLoop(ChangeSetService.java:199)
            at oracle.jdevimpl.vcs.changeset.ChangeSetService.access$200(ChangeSetService.java:56)
            at oracle.jdevimpl.vcs.changeset.ChangeSetService$2.run(ChangeSetService.java:138)
            at java.lang.Thread.run(Thread.java:619)
    "TimedCache-Timer" daemon prio=6 tid=0x03af9c00 nid=0x414 in Object.wait() [0x03fdf000]
       java.lang.Thread.State: TIMED_WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.util.TimerThread.mainLoop(Timer.java:509)
            - locked <0x12869c58> (a java.util.TaskQueue)
            at java.util.TimerThread.run(Timer.java:462)
    "JarIndex Timer" daemon prio=6 tid=0x03945400 nid=0x171c in Object.wait() [0x042df000]
       java.lang.Thread.State: TIMED_WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.util.TimerThread.mainLoop(Timer.java:509)
            - locked <0x127d85a8> (a java.util.TaskQueue)
            at java.util.TimerThread.run(Timer.java:462)
    "AWT-EventQueue-0" prio=6 tid=0x030f4800 nid=0x1684 in Object.wait() [0x041de000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at java.awt.EventQueue.getNextEvent(EventQueue.java:479)
            - locked <0x127d8658> (a java.awt.EventQueue)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:236)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:178)
            at java.awt.Dialog$1.run(Dialog.java:1045)
            at java.awt.Dialog$3.run(Dialog.java:1097)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.awt.Dialog.show(Dialog.java:1095)
            at java.awt.Component.show(Component.java:1563)
            at java.awt.Component.setVisible(Component.java:1515)
            at java.awt.Window.setVisible(Window.java:841)
            at java.awt.Dialog.setVisible(Dialog.java:985)
            at oracle.bali.ewt.dialog.JEWTDialog.runDialog(JEWTDialog.java:395)
            at oracle.bali.ewt.dialog.JEWTDialog.runDialog(JEWTDialog.java:356)
            at oracle.ide.dialogs.ProgressBar.start(ProgressBar.java:352)
            at oracle.ide.dialogs.ProgressBar.start(ProgressBar.java:229)
            at oracle.ideimpl.db.ProgressBarExecutionWrapper.execute(ProgressBarExecutionWrapper.java:108)
            at oracle.javatools.db.execute.StatementWrapper$ExecutionProxy.doExecute(StatementWrapper.java:647)
            at oracle.javatools.db.execute.StatementWrapper$ExecutionProxy.access$200(StatementWrapper.java:585)
            at oracle.javatools.db.execute.StatementWrapper.doExecute(StatementWrapper.java:307)
            at oracle.javatools.db.execute.QueryWrapper.executeQuery(QueryWrapper.java:215)
            at oracle.javatools.db.dictionary.DictionaryDatabase.listObjectsImpl(DictionaryDatabase.java:323)
            at oracle.javatools.db.ora.BaseOracleDatabase.listObjectsImpl(BaseOracleDatabase.java:524)
            at oracle.javatools.db.AbstractDBObjectProvider.listSchemas(AbstractDBObjectProvider.java:859)
            at oracle.ide.db.dialogs.BaseDBEditorFactory.createNamespace(BaseDBEditorFactory.java:503)
            at oracle.ide.db.dialogs.BaseDBEditorFactory.editDBObject(BaseDBEditorFactory.java:357)
            at oracle.ide.db.dialogs.AbstractDBEditorFactory.editDBObject(AbstractDBEditorFactory.java:332)
            at oracle.ide.db.dialogs.BaseDBEditorFactory.editDBObject(BaseDBEditorFactory.java:54)
            at oracle.ide.db.dialogs.AbstractDBEditorFactory.editDBObject(AbstractDBEditorFactory.java:314)
            at oracle.dbtools.raptor.utils.DataBaseNodeUtil.editNodeWizard(DataBaseNodeUtil.java:45)
            at oracle.dbtools.raptor.oviewer.xmleditor.XMLBasedEditor.handleEvent(XMLBasedEditor.java:152)
            at oracle.ide.controller.IdeAction.performAction(IdeAction.java:531)
            at oracle.ide.controller.IdeAction.actionPerformedImpl(IdeAction.java:886)
            at oracle.ide.controller.IdeAction.actionPerformed(IdeAction.java:503)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
            at java.awt.Component.processMouseEvent(Component.java:6263)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
            at java.awt.Component.processEvent(Component.java:6028)
            at java.awt.Container.processEvent(Container.java:2041)
            at java.awt.Component.dispatchEventImpl(Component.java:4630)
            at java.awt.Container.dispatchEventImpl(Container.java:2099)
            at java.awt.Component.dispatchEvent(Component.java:4460)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4574)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
            at java.awt.Container.dispatchEventImpl(Container.java:2085)
            at java.awt.Window.dispatchEventImpl(Window.java:2475)
            at java.awt.Component.dispatchEvent(Component.java:4460)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
    "AWT-Shutdown" prio=4 tid=0x030e6400 nid=0x1680 in Object.wait() [0x040df000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at sun.awt.AWTAutoShutdown.run(AWTAutoShutdown.java:259)
            - locked <0x127d8718> (a java.lang.Object)
            at java.lang.Thread.run(Thread.java:619)
    "AWT-Windows" daemon prio=6 tid=0x03abb400 nid=0x1610 runnable [0x03edf000]
       java.lang.Thread.State: RUNNABLE
            at sun.awt.windows.WToolkit.eventLoop(Native Method)
            at sun.awt.windows.WToolkit.run(WToolkit.java:291)
            at java.lang.Thread.run(Thread.java:619)
    "Java2D Disposer" daemon prio=10 tid=0x03a97400 nid=0x15f8 in Object.wait() [0x03cdf000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
            - locked <0x127d8810> (a java.lang.ref.ReferenceQueue$Lock)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
            at sun.java2d.Disposer.run(Disposer.java:125)
            at java.lang.Thread.run(Thread.java:619)
    "Low Memory Detector" daemon prio=6 tid=0x030d1c00 nid=0x15dc runnable [0x00000000]
       java.lang.Thread.State: RUNNABLE
    "CompilerThread0" daemon prio=10 tid=0x030cb800 nid=0x15d8 waiting on condition [0x00000000]
       java.lang.Thread.State: RUNNABLE
    "Attach Listener" daemon prio=10 tid=0x030ca000 nid=0x15d4 runnable [0x00000000]
       java.lang.Thread.State: RUNNABLE
    "Signal Dispatcher" daemon prio=10 tid=0x030c8c00 nid=0x15d0 waiting on condition [0x00000000]
       java.lang.Thread.State: RUNNABLE
    "Finalizer" daemon prio=8 tid=0x030b9c00 nid=0x15c8 in Object.wait() [0x0343f000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
            - locked <0x12770298> (a java.lang.ref.ReferenceQueue$Lock)
            at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
            at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
    "Reference Handler" daemon prio=10 tid=0x030b5000 nid=0x15c4 in Object.wait() [0x0333f000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
            - locked <0x12770320> (a java.lang.ref.Reference$Lock)
    "main" prio=6 tid=0x00967800 nid=0x1504 waiting on condition [0x00000000]
       java.lang.Thread.State: RUNNABLE
    "VM Thread" prio=10 tid=0x030b1000 nid=0x15c0 runnable
    "VM Periodic Task Thread" prio=10 tid=0x030d3c00 nid=0x15e0 waiting on condition
    JNI global references: 2645
    Heap
    def new generation   total 12544K, used 6205K [0x10010000, 0x10da0000, 0x12770000)
      eden space 11200K,  53% used [0x10010000, 0x105e2ff0, 0x10b00000)
      from space 1344K,  18% used [0x10c50000, 0x10c8c7b8, 0x10da0000)
      to   space 1344K,   0% used [0x10b00000, 0x10b00000, 0x10c50000)
    tenured generation   total 165468K, used 99280K [0x12770000, 0x1c907000, 0x30010000)
       the space 165468K,  59% used [0x12770000, 0x18864308, 0x18864400, 0x1c907000)
    compacting perm gen  total 50432K, used 50210K [0x30010000, 0x33150000, 0x38010000)
       the space 50432K,  99% used [0x30010000, 0x33118aa8, 0x33118c00, 0x33150000)
    No shared spaces configured.- In the beginning of the waiting time, the "locked <0x10c504c0>" in the "ProgressBarThread" changed (at least once) to "locked <0x10c51da0>".
    - Then halfway the waiting time, the "pool-2-thread-1" disappeared, then "pool-2-thread-2" shortly after.
    - Then the "TimedCache-Timer" changed to
    "TimedCache-Timer" daemon prio=6 tid=0x03af9c00 nid=0x414 in Object.wait() [0x03fdf000]
       java.lang.Thread.State: WAITING (on object monitor)
            at java.lang.Object.wait(Native Method)
            at java.lang.Object.wait(Object.java:485)
            at java.util.TimerThread.mainLoop(Timer.java:483)
            - locked <0x12869c58> (a java.util.TaskQueue)
            at java.util.TimerThread.run(Timer.java:462)- Then near the end, the "locked <0x10c51da0>" in the "ProgressBarThread" changed to "locked <0x10b01da0>", then to "locked <0x10c51da0>".
    Hope that helps,
    K.

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    I re-installed the 3.1.1 final version of CCC, did another backup, (both HD and clone now had Security update installed (as was the case with the backup using the CCC beta) and, voila, no more permissions errors there either.
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    I am facing one issue in moving files from data fodler to processed folder in case of background execution.
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