What are some of the advantages/disadvantage of using FC or FCoE with a storage array (EMC)? What is Cisco's recommendation and why?

What are some of the advantages/disadvantages of using FC or FCoE for a storage array? What does Cisco recommend?

This is what I'm considering:
Power:
1050W Seasonic 80PLUS Gold Power Supply
Motherboard:
ASUS, Rampage IV Extreme, 2011, SATA6, True Quad SLI/XFIRE, Extreme OC Capable
CPU:
Intel Core i7-4960X 3.60GHz, 2133MHz DDR3, 15MB Cache, Hex Core Processor
System Memory:
16GB (4 x 4GB) , PC3-19200, 2400MHz (G.Skill - x79)
Video Adapter 1:
NVIDIA GeForce GTX 780ti 3GB GDDR5
Video Adapter 2:
None
Optical 1
16X Blu-ray Burner - 16xBD-R, 2xBD-RW/16xDVD-R, 8xDVD-RW/48xCD-R, 24xCD-RW
Bay Accessories 1
NZXT Aperture M Multi-media Hub
RAID [Requires Identical Hard Drive Selections]
RAID 0 | 2 Disk Min. Striped set, improved performance, additional storage drive highly recommended
Hard Drive 1
Crucial M550 1TB 2.5" SATA III 6GB/sec Solid State Drive
Hard Drive 2
Crucial M550 1TB 2.5" SATA III 6GB/sec Solid State Drive
Hard Drive 3
Crucial M550 1TB 2.5" SATA III 6GB/sec Solid State Drive
Sound Card
Creative Labs Sound Blaster Z PCI Express

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