What do I do with JS file exported from After FX?

I exported a .swf file from After Effects, and it also
exported a Javascript file (as well as an .html file)
What do I do with the JS file? where does it go?

Unfortunately, the answer is, you don't. The requirements for HTML displayed in an e-mail reader are very different than those for HTML displayed in a browser. The output of Muse won't work as an HTML e-mail. You could upload the Muse site as a website and provide a link to it in an e-mail, but the HTML generated by Muse is not suitable for direct display by an e-mail program.

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