What does "Eject disk"  pop up box mean?

After successfully  transferring my AVCHD clips to FCE via a memory card, I turned my Mac around and pulled the card reader from the USB.2 port.
A box popped up. I cannot remember the wording exactly, but it was something like, "Eject disk first...Apple will try to repair card if it is damaged."
There is no disk inserted in my computer. Alarming. I would appreciate a comment. 

Thank you for the prompt reply.
As I don't have a disk in my computer, how do I "unmount" a card reader? Do you mean that I have to hit the "eject" button on my keyboard nd then unplug the card reader?
Thank you.

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