What is the difference between mp4 for iphone and mp4 for ipod ?

I have converted some videos to mp4 and there is a choice to convert to iphone or ipod.
But what is the difference between them ?
It cant just be something simple like screen size / resolution.
Because I have some mp4 videos that will sync with itunes onto my iphone, but not onto my ipod 5th gen.
Do you have to have both types of mp4 videos, one for the iphone and one for the ipod ?
If so then thats a right pain the in arse.
I would have thought mp4 is mp4 and would work on both the iphone and the ipod ?

There is no difference because as you said Java is platform independenec. However, the installer is platform-dependent so we needed to package the Beans differently.
All the java classes and libraries are identical

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