What render settings do I need for Sony EX 1080p/35 editing?

Recently I have been plaqued with a problem that prevents me from exporting a finished file.
I've found something strange about my settings that I need help sorting. I import Sony HD EX files (1080p/35) but have the rendering set to Prores HQ.
If I go to sequences:render and carry out a full render, then any attempt to export the file, either through QT or Compressor, will fail. However, if I wait awhile, a little box appears telling me that an auto-render has taken place. In this case, I can export at will. Most of my clips on the timeline are in Prores ( after a trip to Color) but some appear in a variety of formats, from HDV to full 1080p/35mbs.
Strangely, the Sequence:render selection carries out a further render on request, after which nothing can be done again! Nothing seems to have changed on the timeline but the export fails.
It appears that I have a conflict of settings and need to sort it but I can't see what I need to do. Ideally, I'd like to go back to Sony EX and ignore the Prores but I welcome any advice.

That's great. Thanks
So which version are you running using 4GB?
Do you have to close all other programmes down to help improve the speed?
Cheers

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