What's lost when you reconfigure Enterprise Manager?

Hi all,
Going straight into the questions:
What's lost when you reconfigure a EM? And,
What's stored in the EM Repository?
Configuration: Windows 2003 Server Enterprise, Oracle 10g release 2
All of the EM consoles stopped working after we changed the host name on a Windows Server. The EMC services refuse to start.
It seems that using emca to reconfigure the EMs fixes the problem. But the other problem is that EMCA mentioned that all configuration would be lost.
I tried searching around the forum, Google and the official documentation but couldn't find much details.
It would be much appreciated if you could help me out a bit.
Thanks,
Benjamin

EM repository consists set of tables in a database containing state information for the managed environment and information about the management packs. It is used as a back-end store by the Oracle Management Servers, providing distributed control between clients and managed nodes.

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