What's the difference between old workbench 2.x configuration and new IFCR configurations?

I'm an Endeca old-fashioned guy. We moved from workbench 2.1 directly to ToolsAndFrameworks 11, my question is, what's difference between old workbench 2.x and new IFCR conf?
Looks emgr_update update_mgr_settings isn't doing the same thing ifcr importXML does.
I manually added a thesaurus entry, and ran emgr_update to load it to workbench, but it didn't show up in our new workbench. And when I ran emgr_update get_all_settings, I can see the thesaurus entry I created in the output. So... What's difference between these 2?
Thanks a lot in advance for your help.

emgr_update no longer sets or gets the thesaurus from workbench. In 11 all workbench configurations are saved in IFCR configuration directly.
Hence the thesaurus entry should be added directly in version 11 Workbench as opposed to xml file in older versions.
And if you want to migrate the changes across environments then import_site script in control directory can be used.

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