What to do after an Archive and Install operation?

Hello:
Near the end of a hard drive defrag on the laptop using Drive Genius, something (I am not sure what) caused the computer to shut down before the defrag had finished. Most of the hard drive info. ended up in a folder called Lost and Found. The Directory probably got damaged.
The only solution I could see was to do an Archive and Install operation. The laptop had been backed-up, but the backup was not very current.
DiskWarrior brought the laptop back to life. Some information and apps were manually dragged over from the backup copy. I now have the unsavory task of having to sift through a thousand folders in Lost and Found folder to see if there are any large chunks of folders/files which are salvageable. If I can determine where the files belong, I will drag them there.
Meanwhile, I have a former System Folder in the "Previous System" Folder. Inside is a file named 'mach.sym' and three folders named 'etc, tftpboot and var'.
QUESTIONS:
1. How does a person reclaim the former System Folder back into the rebuilt Hard Drive?
2. Any helpful suggestions or comments .... are we doing the right things to get the laptop back into shape?
Thanks in advance!

Thanks for the assurance note; I will go ahead and trash the former System Folder. I assume the re-installing program dumped the former System Folder into a new folder in order to get it out of the way so that a new System Folder could be installed. I did not remember that the old folder needed to be manually hauled to the trash.
As there are now quite a few folders missing their former data files, I suspect these files are gone for good. So far it does not appear that anything absolutely critical is missing......other than my sanity for being so lax in maintaining scheduled backups!

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