When cropping a pattern solid designs are visible but outlines disappear?

I have just started designing patterns in illustrator. I have designed a couple with no problems cropping in the end. But I have had trouble with a couple. And today I figured out that the parts of the patters that do not have solid filled colors are fine ... but after I crop the parts of the flowers that are just outlines disappear. As you can see I hardly know enough about all of this to maybe even properly ask this question.
For example my current pattern has solid flower and flower outlines. Once I crop the solid flowers are there but the outlines disappear. And I have nothing grouped or locked. I followed seamless pattern instructions I found online.
Hopefully there is someone out there that has a simple solution for me. I would appreciate the help!
Thank you

photojnki,
Cropping removes the stroke. If you click the hollow Stroke square near the bottom of the Toolbox and then click Color below it to the left, you should be able to restore the stroke of whatever is selected, either the whole group or, if DirectSelected, the individual path(s) desired. You can see what is selected in the Layers palette.

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When cropping a pattern solid designs are visible but outlines disappear?

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