When exporting as Microsoft Word, headers and footers created incorrectly

Using Acrobat X, I converted a PDF file to Microsoft Word 2007 format. I selected "Flow Layout" because I'm writing automated software that reads Word documents and flow makes it easier to process. In case you're wondering, I don't read PDF directly simply because most of the documents my software reads is native Word. For the remaining PDF documents, translation to Word prevents me having to write software that reads both Word or PDF files.
Here's the issue:
With Flow layout, Acrobat attempts to determine Word headers and footers. Unfortunately, it does so incorrectly much of the time for many documents. In particular, lines near the top of the file are "pulled" into the header and lines near the bottom are "pulled" into the footer. In the following picture, look closely at the black vs. grey text. The grey text is in the headers and footers. Note also the green squiglies indicating grammer errors.
I either need this fixed, or an option to turn off header/footer recognition.

No problem:) The RC should come out early next week...

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