When exporting separate audio and video streams, the audio drifts out of sync

So this is my first slightly larger project in Final Cut Pro X.
When I export my finished project (around 12 minutes long) straight to quicktime, it plays back perfectly.
When I export using compressor, the resulting audio and video streams are two different lengths. The audio comes out a full second longer. If you try to lay them down in a program like Adobe Encore, the audio starts out perfectly in sync. Two minutes in you notice the video is slightly out of sync with the audio. By the end of the video it's comically bad, over a second out of sync.
What's even more vexing is if I try to take the quicktime file that IS in sync upon playback, and try to convert it burn that to a dvd or blu-ray using toast, the problem re-emerges.
I triec searching around, but most of the suggestions that came up were vauge, like, "Upgrade to a real program like Final Cut." (This was in reply to people who were using free software programs.)
I did see one idea surface where 44 and 48 kHz sampling rates don't play well together. So I combed through my project and found all the 44.1 songs that were used, and swapped them out with upsampled versions. Nothing changed. It didn't sound like it would fix it, as people usually said it was a specific amount of frames off, not something drifting out of sync.
So the question is, does anyone have any suggestions on what could be causing this? Thanks! :-)

Project settings can be accessed and changed by selecting the project and pressing command-J. Then, in the inspector, click on the little gear in the lower-right hand corner to access the settings.
Why are you trying to output video/audio separately? If the content plays in-sync when exporting a quicktime movie (using current project settings), you could try separating the video/audio using MPEG Streamclip as a second step instead of using compressor. For audio, don't change the sample rate from the project settings, and use uncompressed audio (AIFF) as the output format.

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