When I chroma key what do I work on? Files in the browser first? Canvass?

...or timeline? If I have two 3 minute sections of green screen do i edit them first in the timeline sequence or do I first edit out the green screen and then create my short? Very unclear, it seems that I can chroma key but when I look at the movie in the timeline the green is still there!!!!! Check the two files I imported and chroma keyed and they look like the key was successful so I am seeing two different things Infuriating that I can't figure this out after 3 days!\\Thanks
Don

The way most people do it is to first add the clip to the timeline, then apply the chroma key filter to the clip. Double-click the clip and edit the filter settings in the viewer.

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