When I launch Finder for the first time the same folders are always open

Hi. When I first boot up and launch Finder the same folders are always open on my boot drive. I close them all and continue to work on the computer, opening and closing folders as needed for that day's projects until I quit for the day. But the next time I start up (normally the next day) the same exact folders are open on my boot drive when I first open Finder or if I just double-click the drive. I've tried switching accounts and then back again and trashing Finder preferences, making sure every single folder is closed before I shut down, but the folders continue to show up as open the next time I boot up my Mac Pro. Any ideas anyone?
Mac Pro 2.8 GHz Quad-Core Intel Xeon / OS X 10.6.8

Thanks for your suggestion. In the meantime I contacted support at www.bombich.com (creator of Carbon Copy Cloner) and told them what I was thinking about doing and they suggested deleting the hidden .DS_Store files in the folders remaining open. This is the explanation they gave me:
This file, created by the Finder, keeps track of folder view options, icon positions, and other visual information about folders. A separate .DS_Store file is created in each directory about that directory.
So I went online and found the Terminal commands for showing (and hiding) hidden files and trashed, one by one, all the .DS_Store files in the folders that were remaining open and that did the trick. I've tested Finder several times on relaunch and reboot and it's working perfectly again. Folders remain closed as I've left them before shutting down. Big relief. And I've learned something about .DS_Store files.
Thanks to you and Eric Root for your replies and suggestions. They are appreciated.

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