When I launch iBooks, it wants my iTunes password. Apps are disappearing!

Every time I launch iBooks, it wants my iTunes password. If I click Cancel, some of my books disappear. When I leave iBooks, some of my apps are gone too. The only way to get everything back is to plug my iPad back into my MacBook and resynchronize.
Does anyone else have this problem. Better yet, does anyone else know how to make it go away?
I should point out that this happens when I launch iBooks and the wooden bookshelf appears. It has nothing to do with the Bookstore. I have no pending purchases in the Bookstore, iTunes Store, or App Store.

I am having the same problem, every time I leave the app on my ipad and re-open it I get the itunes prompt asking for my password, I haven't tried hitting cancel, but from what you have said I will not, but it is really a pain to have to sign in to open the book every time, my kindle app doesn't do that.

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