When importing Abode premiere footage with video transitions they get wipped out :-(

Afternoon from York UK,  (USING LATEST VERSIONS OF ALL SOFTWARE)
Ok here's today's stress.... I build i video clip with Video transitions, dissolve dip to white to be specific. When i imported the project into After effects all transitions are lost :-( I'm so very confused.
To help here is a screen shot showing the transitions effects exist in the layers but on ram preview and export to mpeg no video transitions show. It is as if i added no transition effects between the clips!
http://i216.photobucket.com/albums/cc53/zymurgy_bucket/lost-video-transitions_zps254d346c. jpg
p.s. Really wanted above link to open in separate window but Ive had enough today of battling with CMS's
Thanks in advance,
David

Thanks Rick,
But I'm such a noob at Ae i've little idea on how to go about "Dynamically linked AE..." I appreciate now Ae is a technical tool which is going to take time to master which is difficult when I had yesterday to send the completed video to the client. Big problems for me are getting generated when I try to import Pr with Ae. Case in point is my Ae created animation being so much bigger than my imported video clip creating this effect: http://i216.photobucket.com/albums/cc53/zymurgy_bucket/misfit-video-clip-langleys-glitch_z pseec728d8.jpg
Spent all day trying to fix this but no joy, I have today to fix this, wish me luck ;-)

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