When/Why is TARGET DISK mode necessary?

I am hoping for some frank and practical advice from the Mac Gurus.
The background is that I am about a year and a half into a move to mac from a "PC" (really Windows XP on Boot Camp on my Mac Pro) and I now have both the MacPro running Snow Leopard and the MacBookPro running Snow Leopard.
I had a heck of a time with permissions and other assorted complications in trying to get my data MOVED from the PC environment and now I am finding that I still have assorted issues (various errors and permissions and file in use etc) in MOVING data from the MBP to the MacPro. My routine now is to COPY data from one machine to the other machine and then to go back and DELETE the folder on the originating computer. I do this because if I force a move by holding the option key down, I find that I am a total and complete loss as to WHAT has been moved and what has not been moved and if the folder that was being moved has multiple SUB-FOLDERS with files in them it is almost impossible for me to determine how to recover from this - effectively - crash. Previous advice has been to simply do an Undo but this is impractical in the sense that I cannot stop my day simply because I want to move a folder that will take a couple of minutes.
Also, I am now trying to make sure that I PLUGIN to Ethernet and TURN OFF the Wifi in order to make sure that I am moving data via Ethernet.
To be honest the decision to COPY data is a new one and I am not sure how effective this is going to be but I have been running into a lot of errors when I was force moving data. This always seemed to me to be a much "cleaner" way to do this since it meant I was not open to the possibility of making a mistake as to what had been moved already (in a hectic day or with a long time for a copy of data) and it also seemed to me to be a good check that everything had been copy-moved since the computer was deleting the originating folder, instead of my doing it manually.
Anyway, long story short -
1. Are there any "cleaner upper routines' that I should be running on these two machines to prevent these various errors and/or to check that everything on each machine is copascetic?
2. /When/ do you decide to boot into Disk Mode and do you basically check the size of your large folders before Moving or Copying Data in order to do this? I assume you can only use target disk mode in firewire is that right?
3. How do folks work in a large networked office with big amounts of data moving around? I mean, is my experience typical and if not, why am I having such difficulty with this?
Thanks for any advice

See mount section in 1st linked article.
Disk Unmount Using Terminal

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