Where are emails in mailboxes stored?

I am running Mavericks 10.9.3 on my iMac and recently had to have the Genius Bar completely reset my system due to issues with performance since the upgrade. I was primarily using Backblaze to back up my entire operating system. I am now trying to restore "Mailboxes on My Mac"in Mail. I was able to get the actual names of mailboxes back via going to my library in the back up and moving all folders to my current library, however it only restored the mailboxes themselves. There are no emails that were but should have been included.
Any ideas of where this missing data is stored and how to get it back to it's appropriate place?
Thank you.

I tried what you suggested. Clicking open simply takes it to a .noindex folder, which using Open for that goes to Data, continuing this process takes me to several numbered folders, with numbered subfolders, then a folder called Messages which then takes me to a saved email or two. It never imports to iMail, but at least I eventually can access the messages and move them manually back to where they need to go I guess. Seems quite tedious though. :/

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Where are emails in mailboxes stored?

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