Where does discover targets get its database information ?

When running a discover targets process, EM is returning 2 databases which have been removed in the past.
Can you tell me where it is picking up this information from please anyone ?

Well yes, but you can always add the database target manually. You don´t have to rely on the automatic discovery.
If the old sids are not statically registered in listener.ora, then they have been dynamically registered and if you bounce the listener, they will be gone. (given that the database instance processes of the removed databases are shut down)
BTW: You can restart the listener with minimal downtime by: lsnrctl stop <listenername> && lsnrctl start <listenername>
Regards,
Martin

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