Where is the database of "server side" sync items?

Server 10.5.6 clients 10.5.5
Problem: Server side file tracking for Mobile Home sync is on. Files are not syncing reliably. Desktop items don't make it back to the network home and other similar issues. The clients get several errors stating that there was a problem syncing one file or another and to contact the admin if it continues.
Turn off Server side tracking. Files sync runs as one would expect, all files sync correctly with no errors.
We use two off site subnets connected via site to site VPN. Sync now takes 10 minutes at those locations.
Turn Server side tracking back on, assuming it might recreate the database automatically. Problems come back.
Needed: How to delete the current presumably corrupt database on the server so that we can run server side tracking again?
Thanks
-Erich

See
http://lists.apple.com/archives/Client-management/2008/Nov/msg00075.html
As well, you might wish to hold off on updating your clients to 10.5.6 if you can, some have reported PHD syncing reliability issues.

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