Where should the certificate be installed??

Hi,
It is possible to install certificates in the Internet Explorer, there is a certificate store for the JRE and there is a certificate store for java web start.
If I have a java web start application which is started via Internet explorer where does the sertificate need to be installed? in IE, in the JRE or in Java Web Start?
Thank you in advance for an explanatio as I don't find this question addressed in the documentation.
Regards,
David

Did you check this , this is very helpful
http://technet.microsoft.com/library/hh534377(v=exchg.141).aspx
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