While I am working in active windows, they will suddenly go inactive.

Ever since I downloaded Yosemite, I've been having trouble with my windows. For example, I will be in Word typing and the window will go inactive, which prevents me from typing. It does the same thing in any window, including while I was typing this. Any help?

Thank you for your reply!
Here comes the report:
EtreCheck version: 2.1.6 (109)
Report generated 26. Januar 2015 10:33:26 MEZ
Hardware Information: ℹ️
  MacBook Pro (Retina, 13-inch, Late 2012) (Technical Specifications)
  MacBook Pro - model: MacBookPro10,2
  1 2.5 GHz Intel Core i5 CPU: 2-core
  8 GB RAM Not upgradeable
  BANK 0/DIMM0
  4 GB DDR3 1600 MHz ok
  BANK 1/DIMM0
  4 GB DDR3 1600 MHz ok
  Bluetooth: Good - Handoff/Airdrop2 supported
  Wireless:  en0: 802.11 a/b/g/n
  Battery Health: Normal - Cycle count 425
Video Information: ℹ️
  Intel HD Graphics 4000
  Color LCD spdisplays_2560x1600Retina
System Software: ℹ️
  OS X 10.10.1 (14B25) - Time since boot: 18:26:45
Disk Information: ℹ️
  APPLE SSD SD128E disk0 : (121,33 GB)
  EFI (disk0s1) <not mounted> : 210 MB
  Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
  Macintosh HD (disk1) /  [Startup]: 120.10 GB (6.44 GB free) (Low!)
  Encrypted AES-XTS Unlocked
  Core Storage: disk0s2 120.47 GB Online
USB Information: ℹ️
  Apple Inc. FaceTime HD Camera (Built-in)
  Apple Inc. Apple Internal Keyboard / Trackpad
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information: ℹ️
  Apple Inc. thunderbolt_bus
Gatekeeper: ℹ️
  Mac App Store and identified developers
Launch Agents: ℹ️
  [loaded] com.citrix.AuthManager_Mac.plist [Support]
  [running] com.citrix.ReceiverHelper.plist [Support]
  [running] com.citrix.ServiceRecords.plist [Support]
  [loaded] com.google.keystone.agent.plist [Support]
  [loaded] com.oracle.java.Java-Updater.plist [Support]
  [loaded] org.gpgtools.Libmacgpg.xpc.plist [Support]
  [invalid?] org.gpgtools.macgpg2.updater.plist [Support]
Launch Daemons: ℹ️
  [loaded] com.adobe.fpsaud.plist [Support]
  [loaded] com.google.keystone.daemon.plist [Support]
  [loaded] com.oracle.java.Helper-Tool.plist [Support]
User Launch Agents: ℹ️
  [loaded] com.pv.tsuninstall.plist [Support]
  [running] com.spotify.webhelper.plist [Support]
User Login Items: ℹ️
  iTunesHelper Programm  (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
  Dropbox Programm  (/Applications/Dropbox.app)
Internet Plug-ins: ℹ️
  FlashPlayer-10.6: Version: 16.0.0.296 - SDK 10.6 [Support]
  Default Browser: Version: 600 - SDK 10.10
  Flash Player: Version: 16.0.0.296 - SDK 10.6 Mismatch! Adobe recommends 16.0.0.287
  QuickTime Plugin: Version: 7.7.3
  o1dbrowserplugin: Version: 5.38.6.0 - SDK 10.8 [Support]
  CitrixICAClientPlugIn: Version: 11.8.2 - SDK 10.7 [Support]
  googletalkbrowserplugin: Version: 5.38.6.0 - SDK 10.8 [Support]
  Silverlight: Version: 5.1.30317.0 - SDK 10.6 [Support]
  JavaAppletPlugin: Version: Java 7 Update 51 Check version
User internet Plug-ins: ℹ️
  Picasa: Version: 1.0 - SDK 10.4 [Support]
Safari Extensions: ℹ️
  AdBlock [Installed]
  DuckDuckGo [Installed]
  Facebook Photo Zoom [Installed]
  FacebookBlocker [Installed]
3rd Party Preference Panes: ℹ️
  Flash Player  [Support]
  GPGPreferences  [Support]
  Java  [Support]
  TeXDistPrefPane  [Support]
Time Machine: ℹ️
  Skip System Files: NO
  Auto backup: YES
  Volumes being backed up:
  Macintosh HD: Disk size: 120.10 GB Disk used: 113.66 GB
  Destinations:
  INTENSO [Local]
  Total size: 999.86 GB
  Total number of backups: 2
  Oldest backup: 2014-01-21 17:38:21 +0000
  Last backup: 2014-01-21 18:46:24 +0000
  Size of backup disk: Excellent
  Backup size 999.86 GB > (Disk size 120.10 GB X 3)
Top Processes by CPU: ℹ️
      80% com.apple.WebKit.Plugin.64
      20% Notes
      17% open
      5% WindowServer
      3% sudo
Top Processes by Memory: ℹ️
  515 MB Safari
  340 MB WindowServer
  258 MB texmaker
  215 MB com.apple.WebKit.Plugin.64
  189 MB softwareupdated
Virtual Memory Information: ℹ️
  99 MB Free RAM
  3.10 GB Active RAM
  3.02 GB Inactive RAM
  1.48 GB Wired RAM
  4.96 GB Page-ins
  22 MB Page-outs
Diagnostics Information: ℹ️
  Jan 25, 2015, 04:07:17 PM Self test - passed
  Jan 24, 2015, 06:22:54 PM /Library/Logs/DiagnosticReports/mtmd_2015-01-24-182254_[redacted].cpu_resource. diag [Details]
  Jan 23, 2015, 11:19:57 AM /Users/[redacted]/Library/Logs/DiagnosticReports/garcon_2015-01-23-111957_[reda cted].crash

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