Why am I missing pieces when printing in Illustrator?

I have a very complex file with many paths and layers.  When I print, all of the complex shapes print just fine but I'm missing two white boxes.  I have tried to recreate them and move them but nothing seems to work. I have printed directly from Illustrator and a pdf versions in Adobe reader and I got the same results for both.  When I print they show up on the screen but not on the paper.  Any suggestions would be greatly appreciated.  Thanks!

You probably have elements with overprint on. Select the white boxes & turn overprint fill off and you should  be back in business

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