Why are my clips shaking after slow motion?

I captured clips from my Canon 7d and converted the clip through mpeg stream clip, pro res, 60 frames, full HD. When I imported it into FCP and set the speed to 50% (or any speed, except normal) the top of the clip shakes the entire time, before I made the clip in slow motion there was no shake.
Any ideas why this is happening?

Did you shoot 720p 60? That is the only format that shoots 60fps.
Conform with CINEMA TOOLS. doing a speed change in FCP doesn't do it right.
Shane

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