Why are my iTunes U files vanishing?

I listen to lecture recordings at work, and I've been converting them to iTunes U media type so that they show up with the other lectures. Lately, though, when I do this, the files simply vanish. I think they're still there, taking up space, but they aren't showing up in Music or in iTunes U.
Where the heck have they gone, and how can I fix this?

The approach mentioned here (smart playlist restricted to "iTunes U" media kind) should make them visible.

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