Why are some clips missing after migrating to my new Mac?

My old Macbook Pro died so I got a new one and have migrated my data to the new one from a Time Machine backup. However, after doing this iMovie is telling me a lot of clips are missing. Many of them are still in tact, but in a lot of cases I see a message like: Missing File "clip-2012-09-13 07;52;06 (id)" is missing. Try reimporting the original source media. I'm using iMovie 10.0.6 and Yosemite (on both the old and new Mac).
Can anybody tell me how I can fix this?
Thanks

If it matters, I have a Canon camcorder and imported the clips using a firewire cable. The external drive is connected via a second firewire cord to the other firewire port.

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Why are some clips missing after migrating to my new Mac?

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