Why are some objects not printing from Illustrator after I print to PDF?

Hi,
I've printed a large Illustrator CS6 document to PDF (using Adobe PDF setting in print dialog box), and it looks just fine when I view the PDF. The problem is that some lines do not print when I try to print the PDF on paper. I've tried adjusting settings and printing to the PDF in different ways, but can't figure it out. Everything looks great on the screen, but some lines are missing once printed to paper. Others have tried printing the PDF as well and are also getting missing lines.
Any suggestions?! Thanks!

I've tried selecting print all layers, and I'm also tiling the pages to a custom page size. I've left all the other settings at default. Everything looks perfect on screen, but parts of the same object do not print. I tried to attach a screen shot but am getting an error. Basically each page has a border around it, and one side of the border is not printing on certain pages.

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