Why does ipad store apps on computer

I am trying to import my music onto new computer, i moved My Music folder to new hard drive and selected Import Folder, and selected My Music.
It now asks me if i want to replace the apps i have (96 of them) and i have to hit DO NOT REPLACE NINETY-SIX times just to get to the next dialogue box.
I DO NOT WANT these apps on my computer from my iPad. How do i get it to quit syncing that way!??!!? So annoying
And why does it import SO MANY duplicate songs?!

If you migrate the library as an entitiy then on your new computer there is nothing to import and no duplicates get created. I suspect it is a workflow thing but without knowing exactly what steps you've taken it is hard to say precisely which things would have triggered problems.
iTunes backs up your apps in case you need to restore the device. When restoring application data is only restored if the app can also be put onto the device so having all the components to hand is a good thing, even if it takes up some room on your hard drive. Perhaps if you backup to the cloud then it might not be necessary to keep copies on your computer, but frankly I would not risk it.
As for duplicates I've written a script called DeDuper which can help remove them. See this  thread for background...
tt2

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