Why does it keep telling me that my photos are referenced when I update my vault?

I recently imported all of my photos into Aperture and immediately set up a Vault to back them up. (I lost 4 years worth of photos so I've become a little paranoid about losing any more photos).
I've also imported some additional photos directly from my camera.
As I go through and edit the pictures in my projects I occasionally update my Vault. A couple of times now it warns me that referenced photos will not be backed up. I set all of the photos to managed and I have no idea what photos it thinks are referenced.
Is it the stuff I am importing? Or the originals that I am editing?
If I select the entire library and convert to managed, it tells me that none of the photos are referenced.
I'm very confused (and suitably nervous about the potential for losing more photos).
Thanks,
Jaime

I do actually....that would make sense....
Thanks!
Jaime

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