Why does my vector illustration convert to an image in illustrator CS6

Hi, there
I am experienced something that really shocked me!
I have done an artwork and hit save, when I reopened my file, my illustration has converted to image, the amazing thing is: just very few part of my illstration has covert to image. I didn't resterize any of my illustration and I have done all my illustration in one file, the rest of my illustrations are fine but two illustration which are in the clipping mask are now images....can any pro help me here!? Much appreciated...

Hi, Mike
Thanks for ur reply,
The original file is ai format , there is no embedded item in the palette, and I've drag it from a server to my desktop when I edited that file so I was saving it on my desktop. 
I have checked the original file (which is on a server ) again. It's ai format and doesn't seem to be changed the format from .pdf into .ai.( as there is no reason to do it….)
I was wondering that if it better to deselect save with .pdf compatible with every .ai file / and if with a possibility that it could damaged the .pdf half, why does adobe make this option into default? What does .pdf compatible help?
Sorry about having lots of questions……

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