Why does the edge of a rectangle show through image placed on top?

I can't figure out why the edge of my yellow filled rectangle shows through the images I place over top of it.
A very thin but visible line appears in my image when the rectangle has no stroke, and a thicker, dark line appears when I apply black stroke to the rectangle.
I've tried arranging the rectangle to the back and the images to the front, but it doesn't work.
Another strange thing about this phenomenon is that it sometimes appears in the Indesign document itself, and sometimes, it is only appearing when I convert to PDF (using X-3:2002 preset).
Any ideas on what's going on. It's driving me crazy.
Thanks.

I did try this change to the pdf settings before, and it doesn't appear to have an effect.
Here are is a sample screen shot of the issue. This is a small part of the PDF created as you have suggestion with the crop image to frames turned off. The line is visible in both the Indesign workspace and the pdf. This is what it looks like without stroke around the yellow box. The image is a png produced in photoshop elements. I've zoomed in quite a bit (that text is 15pt), but it seems like it would show up in a print job.

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