Why is my audio garbled only AFTER being in Premiere Pro?

Hi guys, first post so I'm sorry if I do anything wrong!
I use Premiere Pro CS6 to edit video game recordings and add commentary. I've been doing this for about 6 months and have never had any problems.
On this one MP4, however, something weird happened. Once I import the file and put it in a sequence, the audio is messed up. Most notably it lags behind the video severely and skips a lot. Here's the video in question after exporting from Premiere: http://www.youtube.com/watch?v=RyU2l4XVrtw [WARNING: this is a recording of the video game Dead Space 2, which has a lot of animated violence/blood in it. Also, skip ahead a bit in the video to get past the pause screen]
But when I watch the MP4 in windows media player, it's totally fine! So it's not the file itself that's the problem.
Things I've tried:
- deleting the MP4 from the workspace and re-importing it.
- deleting the sequence and putting the MP4 in a new one.
- putting the MP4 in a new project by itself.
- exporting the sequence to see if the problem fixes itself after exporting.
More info, if it helps:
- I never change the settings of sequences/projects, so my sequences default to widescreen 32kHz. Then when it says "this clip does not match the sequence settings", I just tell it to change the sequence settings to match the clip's settings.
- I have other recordings of the same game, and none of them have this problem.
- I record my xbox 360 with a Happauge HD PVR2 Gaming Edition, which outputs a MP4 of the video and audio to my computer.
I can't think of anything else to add. I really appreciate any help I can get on the situation, because it throws a wrench in my series if I can't upload 10 minutes of the game... and I can't exactly re-record it. THANKS!

Welcome to the forum, breadraptor.
We'd be interested in getting a copy of the problematic clip. I'll send you a private message to pursue that.
Meanwhile, one question about the clip: is the frame rate constant or variable? Many screen capture programs record VFR, and PPRO is known to have sync issues with VFR content, as discussed in this thread: http://forums.adobe.com/message/5962783#5962783. I rather doubt this is the problem in your case given that you have a number of screen capture clips and have this problem with only one of them, but worth putting this card on the table.

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