Why is my search 1000% slower after re-saving a PDF? (Acrobat 9 Pro Extended)

I purchased and downloaded the PDF version of "Javascript: the Definitive Guide" (Flanagan, David, O'Reilly Press, 5th Ed., 2006).
When I first started using the PDF, searches would yield results instantaneously. After making some notations and highlighting some text, I saved the PDF.
Now searches are ridiculously slow.
Luckily, I had a backup copy of the PDF in another folder. I re-opened the original and tried my save again: voila! Same instananeous results.
I thought maybe there had been an embedded index in the PDF, and that re-saving the PDF somehow corrupted or removed it. However, in the original version of the PDF, I can't find anything that indicates why searching is so much faster.
Any ideas?

Also, look at your Search preferences. For example, try Ctrl + K > Search > Fast Find
George

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