Why isn't there a channel mapping module in Compressor?

I need to batch encode DV files with 4 channel audio to MP4's with stereo audio. The problem is I need the first stereo track panned left and the 2nd stereo track panned right.
I know Episode from Telestream can do this, but I hoped I could find a way to do this with the Apple software I've got.
I know I can also do this manually in Quicktime player prior to encoding in Compressor, but since I've got a lot of files to do, I'd rather have an app or maybe an Applescript to do this (it seems from the Quicktime player Applescript Library that I cannot access the right parameters to do this, or can I?).
I've managed to do a batch with Automator by automating QT player via 'Watch me do' but this is not ideal because it is not 100% working all the time.

I disagree, I have tried this also via Final Cut but it's not ideal because there are lots of files and in Final Cut Pro I'd have to make a new sequence for every file before I can do the panning and I'd have to do it manually before I could use batch export.
In that case going to the properties window in Quicktime Pro is faster.
I just don't understand why that parameter isn't scriptable or why there is no option in compressor to route the audio in different ways. Telestream Episode can do this and I think Grassvalley ProCoder can do this as well, it's just that I don't have that software, but if there's no solution with Apple's range of software I'll have to purchase it. 

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