Why will my bookmarks be deleted when syncing?

Just updated to ios6 and when I sync my snow leopard laptop, it tells me that I will lose 25% of my bookmarks.  This never happened before.  What do I do?

If you have your bookmarks in Firefox, then no, they are stored on your computer and have no connection with iGoogle at all.

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    Thanks for the tip. However, the document does not contain the answer to my question. That document says that the music library is completely deleted and then new library is uploaded from the computer. I guess that the same will happen to movies and TV-shows. The questions is, if this will happen to apps also in a way that all the settings and saves will be lost. I would not want to try this without knowing what will happen, because losing all my saves would be annoying, even though there is nothing really important.
    Message was edited by: eviljuzu

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