Why won't my iPhone sync properly with itunes

Once I installed iOS 6 on my iPhone 3GS , my iTunes library stopped syncing properly.  Many playlists are not complete, etc.  am I the only one?  Is there a fix?

Sync Your iOS Device with a New Computer Without Losing Data
http://www.howtogeek.com/104298/sync-your-ios-device-with-a-new-computer-without -losing-data/
Syncing to a "New" Computer or replacing a "crashed" Hard Drive
https://discussions.apple.com/docs/DOC-3141
 Cheers, Tom

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