Will Final Cut Pro X recognize Avid Mojo interfacing with Broadcast Pix?  If so, how do I accomplish this?

Our church used an HP for 12 years that was refurbished and finally died.  We captured Sunday services for broadcast using Avid Express connected to a Broadcast Pix Switcher via an Avid Mojo with a firewire cable.  This week, I replaced it the HP with a Mac in hopes of using Final Cut Pro to capture and edit video for broadcast.  Will Final Cut Pro X recognize Avid Mojo interfacing with Broadcast Pix?  If so, how do I accomplish this?  Currently I have the mojo connected to the Mac via a firewire adapter through the thunderbolt port.  However, the Mac isn't seeing the mojo or the cameras connected to the switcher.

Just turned off background rendering.
I'm not certain what you mean for specs in a specific point in the video, but here are the specs for the entire edit I initially received:
Dimensions: 1920 X 1080
Codecs: H.264, AAC, Timecode
2 Audio Channels
Total bit rate: 12,083
Size: 951,735,770 bytes (951.7 MB on disk)
Here are the specs for the exported video that has the audio issue:
Dimensions: 1920 X 1080
Codecs: H.264, AAC, Timecode
2 Audio Channels
Total bit rate: 12,274
Size: 966,817,082 bytes (966.8 MB on disk)
The video is 10:28 minutes long and the audio leaves at 5:57.
If that wasn't what you were looking for, just let me know. I'm not very good with technical stuff sometimes so may have misunderstood.
Is there something I should have done to the piece before I began color correcting it, like transcoding?

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