Will time machine back up a second "internal" drive?

I have a Macbook Pro "late 2008" unibody.
I'd like to eventually buy an SSD drive to use as my "boot up / programs" drive and then use my much larger conventional drive as a "data" drive which will reside where my superdrive was.  Will time machine back up this second drive or is it limited to the drive it's installed on?
If it's not possible, I'd appreciate any recommendations / tips on how I would back up the second drive or an alternate back up solution to back up both drives more efficiently.

It'll backup all except items you add in the exclude options as below:

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    GregT wrote:
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