Windows 7 and Mac Lion partition maps don't match

I recently upgraded the hard drive in my late 2008 Macbook, and I wanted to copy both my Windows 7 and OSX Lion partitions. I used Time Machine to back up my Lion partition and Windows Backup to back up 7. Then I switched the hard drives, restored Lion with no problem, partitioned the drive into two bigger parts than were on the old harddrive, and restored 7. My problem is this; Disk Utility in Lion shows the correct partition sizes (420 GB for Lion, 480ish for 7), but the Windows 7 Disk Management shows the old partition size (150ish for Lion, 160ish for 7). The rest is just shown as free space. I've tried using the "extend file system into free space" option in Windows 7's Disk Management, but that overwrites most of Lion's data (since Disk Management thinks that its free space). My question is how do I get the partition maps to sync up? I have rEFIt, but when I tell it to sync partition tables, Windows 7 crashes and won't start without a reboot. I'm starting to hate Windows 7...

From your posts I assume that you have 3 drives:
drive A - new internal with MacOSX and Boot Camp/Windows partitions.
drive B - the original internal with MacOSX and Boot Camp/Windows partitions.
Back up external drive(s) with TimeMachine and Windows Backup.
Forget the Backup Drive(s) for now.
You will need a way to connect the original drive to the Mac via USB . If it is not in an enclosure then one of these connectors will do the job.
http://eshop.macsales.com/item/NewerTech/U3NVSPATA/
http://www.granitedigital.com/usb20tosataideharddrivebridgeadapter.aspx
I think you will need to use Winclone as Paragon is a windows startup application and I don't dee how you can do that unless you reinstall the original drive B (can't start Windows from an external drive). There is a Paragon recovery CD you can burn but I don't know what the limitations are with burning from the Mac. Maybe check with the company.
Since drive-A has a good mac OSX install you need to clone the Boot Camp/Windows partition from the original drive-B to new drive-A. You should start up from drive-A and connect drive-B. Use Winclone to replace the drive-A Boot Camp partition with the original drive-B Boot Camp partition.
If the Paragon recovery cd will work then you start from this disk and clone the original drive-B Boot Camp Partition to the new drive-A Boot Camp Partition.

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<Email Edited by Host>

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