Windows not retaining settings after 10.4.11 update

Hello everyone,
I just updated my PowerBook G4/667 Titanium to Mac OS X 10.4.11 (from 10.4.1) and everything is working fine but there is one annoying problem. Every time I restart, when I open some of the windows on my computer, they do not retain their settings - settings like the list view and window size, for example. Some folders DO retain their settings when I open them and some don't (like the Applications folder and the Macintosh HD folder/window which I have to reset every time I restart).
I have to keep setting them to list view every time after a restart. How can I fix this so that they stay the same all the time? Does this have anything to do with the invisible .DS_store files? I don't understand why some windows retain their settings and why some don't.
I've repaired permissions numerous times. Cleared cache files. Tried setting the "global" view from the Finder > View > Show View Options to "All Windows". Tried everything I know.
Can someone please tell me what I can do to fix this?
Thanks so much,
Gerard

Hi Gerard, and a warm welcome to the forums!
Safe Boot , (holding Shift key down at bootup), use Disk Utility from there to Repair Permissions, move these files to the Desktop.
/Users/YourUserName/Library/Preferences/com.apple.finder.plist
/Users/YourUserName/Library/Preferences/com.apple.desktop.plist
Then reboot once more.

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