Wont boot after Deleting Mac OS 9 files from Mac Pro

I noticed some Mac OS 9 files on my main HD. Incorrectly, I guess, I figured I could just delete them.  Well.... It allowed me to trash some, and not others. When I tried to move those out of trash back to their folders, it wouldn't let me. SO, I rebooted only to find out my Mac Pro wont boot up now!. All I get is a grey screen with Apple symbol and the indicator going round and round and round.
Rebooted holding option and selecting a Tech Tool sectioned of drive. When to my back up and copy the Mac OS 9 files from it back to the main HD. Didn't work. Then tried to use Time Machine.. still no go.
I'm thing I need to reinstall my MAc OSX 10.6.8 that I have as an dmg file on another drive.
Any suggestions? 
Thanks,
Ray

learn to clone your system  gave bootabke backups.then never alter, upgrades included, without one or more.
install macis x somewhere else, then use setup assist. and/or migration assistant.

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