Working with footage from Canon 5D Mark ii

Hi
I have recently started working with video taken on a Canon 5D Mark ii.
Should I always convert all my footage into Apple Pro Res 422 (HQ) when I want to edit HD 1920x1080 footage?
Also I have just finished a project not knowing that this might have to be done, and when I added colour correction the exported quick time conversion looked terrible.
Is there any way to save this edit, or should I just convert the origional footage and start again?!
Thanks

This is a topic that gets discussed a lot, and i'm curious if anyone has any more insight into it. From what i understand, ProRes HQ is 10-bit codec, while normal ProRes is 8-bit. The footage coming off of your h.264 camera is in 8-bit space, so if you encode it to 10-bit, you're just getting filling in a bunch of extra space. it's like building a 3-car garage for your motorcycle.
One of the reasons the files get so much larger going from H.264 to APR is that H.264 is an inter-frame codec, meaning that it uses information from more than one frame and evaluates the changes from frame to frame to calculate what any individual frame should look like. This means you don't need to store as much raw data for each frame, but it's more processing intensive to calculate the image from what's there. Final cut doesn't like to do this kind of calculation, at least in its current incarnation. So you convert it to APR 422, which is an Intra-frame codec, which stores all of the information for each frame individually in one place, even if it's a relatively unchanging shot. this means a lot more raw data, but it also means final cut can just look in one place for each frame and not have to figure out how to build it out of the surrounding frames. larger files, but easier on the program.
premiere is supposedly kicking *** right now with dealing with this kind of stuff. and they are integrating h.264 specific chipsets in some of the newer computers, so it may become less of an issue in the future. from what i understand anyway.
anyway. if anyone has any other shades of clarification about what's going on with the technical sides of that stuff, i'm trying to get more clear myself.

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