Writing Tags in iTunes Results in "Invalid Public Atom"

I've been using QT to export some TV shows to my iTunes library and in turn to my iPhone. I'm using the QT "export to iPhone" setting.
Anyway, they play fine after I add them to iTunes and also play fine on my iPhone. The problem starts when I try to change the info for the shows. Changing them from "Movie" to "TV show" and adding the Episode and Season. More and more lately that process has pretty much locked up while "writing new tags" and I've had to force quit iTunes. After that the movies will no longer open and get the "Invalid Public Atom" error.
Anyone have any ideas? It's weird as sometimes that "writing new tags" process is nearly instantaneous, but I know that if it's taking too long it will result in a newly corrupted movie.

I can confirm this. In experimenting with copying some of my video files into iTunes, 3 out of 6 files were corrupted. The first two I canceled after the "writing tags..." was taking over 5 minutes and resulted in the public atom being corrupted. The third finished after a couple minutes but resulted in a file that previously played fine in Quicktime now heavily corrupted in both iTunes and QT- pixization, frames being merged, long "green" patches as if iframes were randomly removed. I had imported the files into my library and was setting Genre tags when this occurred, both in the library itself and via the "get info" interface. I'm surprised to find that iTunes maintains file information actually in the file, which clearly runs the risk of corrupting the file each time metadata is changed and an aspect of the file, I assume the header, is rewritten. Lucky I believe in backups.
Some information about my configuration: Files are not copied locally but are on a nfs mount of a linux dataserver. All files are H.264 mpeg4 encodes and a mixture of Handbrake backups and encodes via Compressor. All the files are over 1G but under 3G. Based just on this data, there is not a pattern in the failures. iTunes 8.0.2(20), Leopard 10.5.6, Macbook Pro2,2

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