XML-XDP Merging - Some files are dropped - how to fix it?

Hello!
I've created a very simple process in Workbench using Output to merge XLM and XDP files and generate PDFs.
The XML files are dropped in a watched folder and each file has 10,000 lines.
If I drop just one XML file the process will run smoothly and create the PDF accordingly.
However, if I drop, say, 12 files in the folder, only 3 or 4 files are processed and the others are dropped. In the error log I get this:
Failure Time----Fri Dec 17 11:32:07 BRST 2010
source location ---- Reason of failure is-----Internal error.
Internal error.
[com.arjuna.ats.internal.jta.transaction.arjunacore.inactive] [com.arjuna.ats.internal.jta.transaction.arjunacore.inactive] The transaction is not active!
[com.arjuna.ats.internal.jta.transaction.arjunacore.inactive] [com.arjuna.ats.internal.jta.transaction.arjunacore.inactive] The transaction is not active!
ALC-DSC-000-000: com.adobe.idp.dsc.DSCRuntimeException: Internal error.
Is there a way of solving this?
When the process was running I checked the CPU and RAM usage in Task Manager and realized they were both at 100% most of the time.
Is there a way of avoiding this problem?
I'm running this on a Core2 Duo with 4 GB RAM.
Thank you for any ideas!
Marcos

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