.Xmp files and saving, and these other files that are also .NEFs

Okay, so my boss lives in Vancouver and I live in Ontario. I help her edit photos and then I email her a zip of all the .xmps. Now. Here is my question:
I am currently running LR 2.6, and at the end of my editing I select all the photos and save the metadata to files, but in the TOP LEFT HAND CORNER (you know, where it has that little in progress bar) it says it is saving a weird variation of my original NEF file.
For example...if I have a file that is originally called janie-awesome-0003.NEF it will save it as ._janie-awesome-0003.NEF (note the period and underscore before janie). So I can't tell if it has updated my .xmp files, so I can't tell as well if my boss is getting the proper files or not. I mean, she says she can see that the photos are edited, but is that metadata completely up to date??? This is what is freaking me out. What are those other NEF files? And why can't it just say "saving to .XMP" files instead of those weird NEF files?
So in my folder I have the original NEF files, the weird NEF files, and also the XMP. Does the XMP get overwritten when I save them? My Automatically save XMP is OFF so should I turn it on?
I am SO confused about the whole XMP thing!!!! How can I be sure that my boss is getting my COMPLETELY edited photos instead of just like my first sweep through or something?
Thanks!
Janie

Does your boss also use Lightroom? It would be a lot less effort for you to send back the work using File > Export as Catalog. So you would email her an exported catalogue of the images you've edited, and she would use File > Import as Catalog to bring your work into her catalogue. File names would have to stay the same, and there are other details that need to be handled.
The ._ problem is weird. Are the files on an internal or external drive? What sort of connection - USB? Mac or Windows?
John

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